//genesis // kkit Version 10 flat dumpfile // Saved on Fri Mar 19 16:50:05 2004 include kkit {argv 1} FASTDT = 0.0001 SIMDT = 0.0001 CONTROLDT = 1 PLOTDT = 1 MAXTIME = 1000 TRANSIENT_TIME = 2 VARIABLE_DT_FLAG = 0 DEFAULT_VOL = 1.6667e-21 VERSION = 10.0 setfield /file/modpath value /home2/bhalla/scripts/modules kparms //genesis initdump -version 3 -ignoreorphans 1 simobjdump table input output alloced step_mode stepsize x y z simobjdump xtree path script namemode sizescale simobjdump xcoredraw xmin xmax ymin ymax simobjdump xtext editable simobjdump xgraph xmin xmax ymin ymax overlay simobjdump xplot pixflags script fg ysquish do_slope wy simobjdump group xtree_fg_req xtree_textfg_req plotfield expanded movealone \ link savename file version md5sum mod_save_flag x y z simobjdump kpool CoTotal CoInit Co n nInit nTotal nMin vol slave_enable notes \ xtree_fg_req xtree_textfg_req x y z simobjdump kreac kf kb notes xtree_fg_req xtree_textfg_req x y z simobjdump kenz CoComplexInit CoComplex nComplexInit nComplex vol k1 k2 k3 \ keepconc usecomplex notes xtree_fg_req xtree_textfg_req link x y z simobjdump stim level1 width1 delay1 level2 width2 delay2 baselevel trig_time \ trig_mode notes xtree_fg_req xtree_textfg_req is_running x y z simobjdump xtab input output alloced step_mode stepsize notes editfunc \ xtree_fg_req xtree_textfg_req baselevel last_x last_y is_running x y z simobjdump kchan perm gmax Vm is_active use_nernst notes xtree_fg_req \ xtree_textfg_req x y z simobjdump transport input output alloced step_mode stepsize dt delay clock \ kf xtree_fg_req xtree_textfg_req x y z simobjdump proto x y z simobjdump linkinfo xtree_fg_req xtree_textfg_req uplink downlink x y z simobjdump uplink xtree_fg_req xtree_textfg_req x y z simobjdump downlink xtree_fg_req xtree_textfg_req x y z simobjdump mirror notes xtree_fg_req x y z simundump kpool /kinetics/S* 0 10 100 100 100 100 10 0 1 4 "" yellow black -4 \ 1 0 simundump kpool /kinetics/A 0 1 1 0.090909 0.090909 1 1 0 1 0 "" #FF8888 \ black -2 5 0 simundump kpool /kinetics/A* 0 1 0 0.90909 0.90909 0 1 0 1 0 "" red black 0 3 \ 0 simundump kreac /kinetics/KA 0 1 10 "" white black -2 3 0 simundump kreac /kinetics/KI 0 10 1 "" white black -2 -1 0 simundump kpool /kinetics/I 0 1 1 0.000999 0.000999 1 1 0 1 0 "" #8888FF \ black -2 -3 0 simundump kpool /kinetics/I* 0 1 0 0.999 0.999 0 1 0 1 0 "" blue black 0 -1 0 simundump kpool /kinetics/R 0 1 1 0.09901 0.09901 1 1 0 1 0 "" #88FF88 black \ 3 1 0 simundump kpool /kinetics/R* 0 1 0 0.90099 0.90099 0 1 0 1 0 "" green black 7 \ 1 0 simundump kpool /kinetics/A*_for_R 0 0 0 0.90909 0.90909 0 0.90909 0 1 0 "" \ red black 5 3 0 simundump kreac /kinetics/ka_ki 0 100 10 "" white black 5 1 0 simundump kpool /kinetics/I*_for_R 0 0 0 0.999 0.999 0 0.999 0 1 0 "" blue \ black 5 -1 0 simundump xgraph /graphs/conc1 0 0 1000 0 1 0 simundump xgraph /graphs/conc2 0 0 1000 0 1 0 simundump xplot /graphs/conc1/A*.Co 3 524288 \ "delete_plot.w ; edit_plot.D " red 0 0 1 simundump xplot /graphs/conc1/R*.Co 3 524288 \ "delete_plot.w ; edit_plot.D " green 0 0 1 simundump xplot /graphs/conc1/I*.Co 3 524288 \ "delete_plot.w ; edit_plot.D " blue 0 0 1 simundump xplot /graphs/conc2/S*.Co 3 524288 \ "delete_plot.w ; edit_plot.D " yellow 0 0 1 simundump xgraph /moregraphs/conc3 0 0 1000 0 1 0 simundump xgraph /moregraphs/conc4 0 0 1000 0 1 0 simundump xcoredraw /edit/draw 0 -6 9 -5 7 simundump xtree /edit/draw/tree 0 \ /kinetics/#[],/kinetics/#[]/#[],/kinetics/#[]/#[]/#[][TYPE!=proto],/kinetics/#[]/#[]/#[][TYPE!=linkinfo]/##[] \ "edit_elm.D ; drag_from_edit.w " auto 0.6 simundump xtext /file/notes 0 1 addmsg /kinetics/KA /kinetics/S* REAC A B addmsg /kinetics/KI /kinetics/S* REAC A B addmsg /kinetics/KA /kinetics/A REAC A B addmsg /kinetics/A* /kinetics/A CONSERVE n nInit addmsg /kinetics/KA /kinetics/A* REAC B A addmsg /kinetics/S* /kinetics/KA SUBSTRATE n addmsg /kinetics/A /kinetics/KA SUBSTRATE n addmsg /kinetics/A* /kinetics/KA PRODUCT n addmsg /kinetics/S* /kinetics/KI SUBSTRATE n addmsg /kinetics/I /kinetics/KI SUBSTRATE n addmsg /kinetics/I* /kinetics/KI PRODUCT n addmsg /kinetics/KI /kinetics/I REAC A B addmsg /kinetics/I* /kinetics/I CONSERVE n nInit addmsg /kinetics/KI /kinetics/I* REAC B A addmsg /kinetics/ka_ki /kinetics/R REAC A B addmsg /kinetics/R* /kinetics/R CONSERVE n nInit addmsg /kinetics/ka_ki /kinetics/R* REAC B A addmsg /kinetics/A* /kinetics/A*_for_R SUMTOTAL n nInit addmsg /kinetics/ka_ki /kinetics/A*_for_R REAC A B addmsg /kinetics/R /kinetics/ka_ki SUBSTRATE n addmsg /kinetics/R* /kinetics/ka_ki PRODUCT n addmsg /kinetics/A*_for_R /kinetics/ka_ki SUBSTRATE n addmsg /kinetics/I*_for_R /kinetics/ka_ki PRODUCT n addmsg /kinetics/ka_ki /kinetics/I*_for_R REAC B A addmsg /kinetics/I* /kinetics/I*_for_R SUMTOTAL n nInit addmsg /kinetics/A* /graphs/conc1/A*.Co PLOT Co *A*.Co *red addmsg /kinetics/R* /graphs/conc1/R*.Co PLOT Co *R*.Co *green addmsg /kinetics/I* /graphs/conc1/I*.Co PLOT Co *I*.Co *blue addmsg /kinetics/S* /graphs/conc2/S*.Co PLOT Co *S*.Co *yellow enddump // End of dump complete_loading