//genesis // kkit Version 10 flat dumpfile // Saved on Fri Mar 19 16:41:08 2004 include kkit {argv 1} FASTDT = 0.0001 SIMDT = 0.001 CONTROLDT = 1 PLOTDT = 1 MAXTIME = 600 TRANSIENT_TIME = 2 VARIABLE_DT_FLAG = 0 DEFAULT_VOL = 1.6667e-21 VERSION = 10.0 setfield /file/modpath value /home2/bhalla/scripts/modules kparms //genesis initdump -version 3 -ignoreorphans 1 simobjdump table input output alloced step_mode stepsize x y z simobjdump xtree path script namemode sizescale simobjdump xcoredraw xmin xmax ymin ymax simobjdump xtext editable simobjdump xgraph xmin xmax ymin ymax overlay simobjdump xplot pixflags script fg ysquish do_slope wy simobjdump group xtree_fg_req xtree_textfg_req plotfield expanded movealone \ link savename file version md5sum mod_save_flag x y z simobjdump kpool CoTotal CoInit Co n nInit nTotal nMin vol slave_enable notes \ xtree_fg_req xtree_textfg_req x y z simobjdump kreac kf kb notes xtree_fg_req xtree_textfg_req x y z simobjdump kenz CoComplexInit CoComplex nComplexInit nComplex vol k1 k2 k3 \ keepconc usecomplex notes xtree_fg_req xtree_textfg_req link x y z simobjdump stim level1 width1 delay1 level2 width2 delay2 baselevel trig_time \ trig_mode notes xtree_fg_req xtree_textfg_req is_running x y z simobjdump xtab input output alloced step_mode stepsize notes editfunc \ xtree_fg_req xtree_textfg_req baselevel last_x last_y is_running x y z simobjdump kchan perm gmax Vm is_active use_nernst notes xtree_fg_req \ xtree_textfg_req x y z simobjdump transport input output alloced step_mode stepsize dt delay clock \ kf xtree_fg_req xtree_textfg_req x y z simobjdump proto x y z simobjdump linkinfo xtree_fg_req xtree_textfg_req uplink downlink x y z simobjdump uplink xtree_fg_req xtree_textfg_req x y z simobjdump downlink xtree_fg_req xtree_textfg_req x y z simobjdump mirror notes xtree_fg_req x y z simundump kpool /kinetics/S* 0 30 1.2287e-06 1.2286e-06 1.2286e-06 1.2287e-06 \ 30 0 1 0 "" yellow black -4 1 0 simundump kpool /kinetics/R* 0 1 0.1976 0.15987 0.15987 0.1976 1 0 1 0 "" \ #00BB00 black 16 4 0 simundump kpool /kinetics/Ca2+ 0 1 0.1 0.1 0.1 0.1 1 0 1 4 "" orange black -6 \ 3 0 simundump kreac /kinetics/Kd_nH 0 10 24010 "" white black -6 1 0 simundump kpool /kinetics/S 0 30 29.5 29.5 29.5 29.5 30 0 1 0 "" #FFFF88 \ black -8 1 0 simundump kpool /kinetics/K 0 0.5 0.49742 0.49777 0.49777 0.49742 0.5 0 1 0 \ "" #FF8888 black -4 5 0 simundump kreac /kinetics/k1_k2 0 150 2.17 "" white black -2 3 0 simundump kpool /kinetics/K' 0 0.5 4.2246e-05 4.1386e-05 4.1386e-05 \ 4.2246e-05 0.5 0 1 0 "" red black 0 3 0 simundump kpool /kinetics/K* 0 0.5 0.0025379 0.0021859 0.0021859 0.0025379 \ 0.5 0 1 0 "" red black 4 3 0 simundump kpool /kinetics/N 0 1 0.9998 0.9998 0.9998 0.9998 1 0 1 0 "" \ #8888FF black -4 -3 0 simundump kpool /kinetics/N* 0 1 0.00020474 0.00020473 0.00020473 0.00020474 \ 1 0 1 0 "" blue black 0 -1 0 simundump kpool /kinetics/K'+K* 0 0.0025801 0.0025801 0.0022273 0.0022273 \ 0.0025801 0.0022273 0 1 0 "" red black 14 6 0 simundump kpool /kinetics/N*_for_D 0 0.00020474 0.00020474 0.00020473 \ 0.00020473 0.00020474 0.00020473 0 1 0 "" blue black 10 -4 0 simundump kpool /kinetics/D* 0 3 0.0062089 0.0059985 0.0059985 0.0062089 3 0 \ 1 0 "" #FF0088 black 12 -2 0 simundump kpool /kinetics/D 0 3 1.2712 1.2802 1.2802 1.2712 3 0 1 0 "" \ #FF88BB black 8 -2 0 simundump kpool /kinetics/D*P* 0 3 1.7226 1.7138 1.7138 1.7226 3 0 1 0 "" \ #888888 black 16 -2 0 simundump kreac /kinetics/d1_d2 0 0.002 2000 "" white black 10 -2 0 simundump kreac /kinetics/p1_p2 0 30 0.03 "" white black 14 -2 0 simundump kpool /kinetics/R' 0 1 0.21248 0.21674 0.21674 0.21248 1 0 1 0 "" \ green black 12 4 0 simundump kpool /kinetics/R 0 1 0.58993 0.62339 0.62339 0.58993 1 0 1 0 "" \ #88FF88 black 8 4 0 simundump kreac /kinetics/k3_k4 0 0.5 0.03 "" white black 2 3 0 simundump kpool /kinetics/P* 0 2 0.27744 0.28627 0.28627 0.27744 2 0 1 0 "" \ cyan black 14 0 0 simundump kpool /kinetics/P*_for_K 0 0.27744 0.27744 0.28627 0.28627 0.27744 \ 0.28627 0 1 0 "" cyan black 2 1 0 simundump kreac /kinetics/r1_r2 0 0.1 1 "" white black 10 4 0 simundump kreac /kinetics/r3_r4 0 10 0.1 "" white black 14 4 0 simundump kpool /kinetics/PKA*_for_D 0 1 1 1 1 1 1 0 1 4 "" white black 10 0 \ 0 simundump kpool /kinetics/PKA*_for_R 0 1 1 1 1 1 1 0 1 4 "" white black 10 6 \ 0 simundump kpool /kinetics/P*_for_R 0 0.27744 0.27744 0.28627 0.28627 0.27744 \ 0.28627 0 1 0 "" cyan black 14 2 0 simundump kreac /kinetics/n1_n2 0 1666.7 10 "" white black -2 -1 0 simundump kpool /kinetics/N*+P* 0 0.27764 0.27764 0.28647 0.28647 0.27764 \ 0.28647 0 1 0 "" #0088FF black 10 2 0 simundump xgraph /graphs/conc1 0 0 600 0 1 0 simundump xgraph /graphs/conc2 0 0 600 0 1 0 simundump xplot /graphs/conc1/R.Co 3 524288 \ "delete_plot.w ; edit_plot.D " #88FF88 0 0 1 simundump xplot /graphs/conc1/R*.Co 3 524288 \ "delete_plot.w ; edit_plot.D " #00BB00 0 0 1 simundump xplot /graphs/conc1/R'.Co 3 524288 \ "delete_plot.w ; edit_plot.D " green 0 0 1 simundump xplot /graphs/conc2/Ca2+.Co 3 524288 \ "delete_plot.w ; edit_plot.D " orange 0 0 1 simundump xgraph /moregraphs/conc3 0 0 600 0 0.25 0 simundump xgraph /moregraphs/conc4 0 0 600 0 1.2 0 simundump xplot /moregraphs/conc3/K'+K*.Co 3 524288 \ "delete_plot.w ; edit_plot.D " red 0 0 1 simundump xplot /moregraphs/conc4/N*+P*.Co 3 524288 \ "delete_plot.w ; edit_plot.D " #0088FF 0 0 1 simundump xcoredraw /edit/draw 0 -10 18 -6 8 simundump xtree /edit/draw/tree 0 \ /kinetics/#[],/kinetics/#[]/#[],/kinetics/#[]/#[]/#[][TYPE!=proto],/kinetics/#[]/#[]/#[][TYPE!=linkinfo]/##[] \ "edit_elm.D ; drag_from_edit.w " auto 0.6 simundump xtext /file/notes 0 1 addmsg /kinetics/k1_k2 /kinetics/S* REAC A B addmsg /kinetics/n1_n2 /kinetics/S* REAC A B addmsg /kinetics/Kd_nH /kinetics/S* REAC B A addmsg /kinetics/r3_r4 /kinetics/R* REAC B A addmsg /kinetics/Kd_nH /kinetics/Ca2+ REAC A B addmsg /kinetics/Kd_nH /kinetics/Ca2+ REAC A B addmsg /kinetics/Kd_nH /kinetics/Ca2+ REAC A B addmsg /kinetics/Kd_nH /kinetics/Ca2+ REAC A B addmsg /kinetics/Ca2+ /kinetics/Kd_nH SUBSTRATE n addmsg /kinetics/S* /kinetics/Kd_nH PRODUCT n addmsg /kinetics/S /kinetics/Kd_nH SUBSTRATE n addmsg /kinetics/Ca2+ /kinetics/Kd_nH SUBSTRATE n addmsg /kinetics/Ca2+ /kinetics/Kd_nH SUBSTRATE n addmsg /kinetics/Ca2+ /kinetics/Kd_nH SUBSTRATE n addmsg /kinetics/Kd_nH /kinetics/S REAC A B addmsg /kinetics/S* /kinetics/S CONSERVE n nInit addmsg /kinetics/K /kinetics/S CONSERVE n nInit addmsg /kinetics/K' /kinetics/S CONSERVE n nInit addmsg /kinetics/K* /kinetics/S CONSERVE n nInit addmsg /kinetics/N* /kinetics/S CONSERVE n nInit addmsg /kinetics/k1_k2 /kinetics/K REAC A B addmsg /kinetics/K' /kinetics/K CONSERVE n nInit addmsg /kinetics/K* /kinetics/K CONSERVE n nInit addmsg /kinetics/S* /kinetics/k1_k2 SUBSTRATE n addmsg /kinetics/K /kinetics/k1_k2 SUBSTRATE n addmsg /kinetics/K' /kinetics/k1_k2 PRODUCT n addmsg /kinetics/k1_k2 /kinetics/K' REAC B A addmsg /kinetics/k3_k4 /kinetics/K' REAC A B addmsg /kinetics/k3_k4 /kinetics/K* REAC B A addmsg /kinetics/n1_n2 /kinetics/N REAC A B addmsg /kinetics/N* /kinetics/N CONSERVE n nInit addmsg /kinetics/n1_n2 /kinetics/N* REAC B A addmsg /kinetics/K' /kinetics/K'+K* SUMTOTAL n nInit addmsg /kinetics/r3_r4 /kinetics/K'+K* REAC A B addmsg /kinetics/K* /kinetics/K'+K* SUMTOTAL n nInit addmsg /kinetics/N* /kinetics/N*_for_D SUMTOTAL n nInit addmsg /kinetics/d1_d2 /kinetics/N*_for_D REAC B A addmsg /kinetics/d1_d2 /kinetics/D* REAC B A addmsg /kinetics/p1_p2 /kinetics/D* REAC A B addmsg /kinetics/D /kinetics/D* CONSERVE n nInit addmsg /kinetics/D*P* /kinetics/D* CONSERVE n nInit addmsg /kinetics/d1_d2 /kinetics/D REAC A B addmsg /kinetics/p1_p2 /kinetics/D*P* REAC B A addmsg /kinetics/PKA*_for_D /kinetics/d1_d2 SUBSTRATE n addmsg /kinetics/D /kinetics/d1_d2 SUBSTRATE n addmsg /kinetics/D* /kinetics/d1_d2 PRODUCT n addmsg /kinetics/N*_for_D /kinetics/d1_d2 PRODUCT n addmsg /kinetics/P* /kinetics/p1_p2 SUBSTRATE n addmsg /kinetics/D* /kinetics/p1_p2 SUBSTRATE n addmsg /kinetics/D*P* /kinetics/p1_p2 PRODUCT n addmsg /kinetics/r3_r4 /kinetics/R' REAC A B addmsg /kinetics/r1_r2 /kinetics/R' REAC B A addmsg /kinetics/r1_r2 /kinetics/R REAC A B addmsg /kinetics/R' /kinetics/R CONSERVE n nInit addmsg /kinetics/R* /kinetics/R CONSERVE n nInit addmsg /kinetics/K' /kinetics/k3_k4 SUBSTRATE n addmsg /kinetics/K* /kinetics/k3_k4 PRODUCT n addmsg /kinetics/P*_for_K /kinetics/k3_k4 PRODUCT n addmsg /kinetics/p1_p2 /kinetics/P* REAC A B addmsg /kinetics/D*P* /kinetics/P* CONSERVE n nInit addmsg /kinetics/k3_k4 /kinetics/P*_for_K REAC B A addmsg /kinetics/P* /kinetics/P*_for_K SUMTOTAL n nInit addmsg /kinetics/N*+P* /kinetics/r1_r2 PRODUCT n addmsg /kinetics/PKA*_for_R /kinetics/r1_r2 SUBSTRATE n addmsg /kinetics/R /kinetics/r1_r2 SUBSTRATE n addmsg /kinetics/R' /kinetics/r1_r2 PRODUCT n addmsg /kinetics/R' /kinetics/r3_r4 SUBSTRATE n addmsg /kinetics/R* /kinetics/r3_r4 PRODUCT n addmsg /kinetics/K'+K* /kinetics/r3_r4 SUBSTRATE n addmsg /kinetics/P*_for_R /kinetics/r3_r4 PRODUCT n addmsg /kinetics/d1_d2 /kinetics/PKA*_for_D REAC A B addmsg /kinetics/r1_r2 /kinetics/PKA*_for_R REAC A B addmsg /kinetics/r3_r4 /kinetics/P*_for_R REAC B A addmsg /kinetics/P* /kinetics/P*_for_R SUMTOTAL n nInit addmsg /kinetics/S* /kinetics/n1_n2 SUBSTRATE n addmsg /kinetics/N /kinetics/n1_n2 SUBSTRATE n addmsg /kinetics/N* /kinetics/n1_n2 PRODUCT n addmsg /kinetics/N* /kinetics/N*+P* SUMTOTAL n nInit addmsg /kinetics/P* /kinetics/N*+P* SUMTOTAL n nInit addmsg /kinetics/r1_r2 /kinetics/N*+P* REAC B A addmsg /kinetics/R /graphs/conc1/R.Co PLOT Co *R.Co *#88FF88 addmsg /kinetics/R* /graphs/conc1/R*.Co PLOT Co *R*.Co *#00BB00 addmsg /kinetics/R' /graphs/conc1/R'.Co PLOT Co *R'.Co *green addmsg /kinetics/Ca2+ /graphs/conc2/Ca2+.Co PLOT Co *Ca2+.Co *orange addmsg /kinetics/K'+K* /moregraphs/conc3/K'+K*.Co PLOT Co *K'+K*.Co *red addmsg /kinetics/N*+P* /moregraphs/conc4/N*+P*.Co PLOT Co *N*+P*.Co *#0088FF enddump // End of dump complete_loading