Harmonization

Open-access Harmonization Dataset

In 2013, the Japan Agency for Medical Research and Development (AMED) organized the Decoded Neurofeedback (DecNef) Project. The project determined the unified imaging protocol on 28th February 2014 (https://bicr.atr.jp/rs-fmri-protocol-2/) and have collected multisite resting-state functional magnetic resonance imaging (rs-fMRI) data using fourteen scanners across eight research institutes for the last five years. The collected dataset encompasses 2,239 participants and five disorders and is publicly shared through the SRPBS multisite multi-disorder database (https://bicr-resource.atr.jp/decnefpro/). We also collected traveling-subject rs-fMRI dataset to estimate measurement bias in each imaging site. Here we released the data (Harmonization Dataset) used in our paper below.
Harmonization Dataset includes the part of SRPBS multisite multi-disorder database.

  • Functional connectivity matrix data from 5-10 min resting state fMRI
  • Analysis codes used in the paper below

Furthermore, we released the raw data of the part of SRPBS multisite multi-disorder database.

  • rsfMRI EPI images
  • defaced T1 image


How to download the harmonization dataset

We invite investigators to apply for access to these data from the DecNef-Project Consortium. The brain data is allowed to use for non-commercial purpose only. You are asked to email to us () attached a form of “the Terms of Use” after filling your information and requirements.
After we approve your request, you will receive a password to access download page via email. If you have any questions about the brain data, please contact us () by email.

Harmonization dataset can be downloaded from below page (*You need a password to access this page.)

Harmonization data

Authors:
Ayumu Yamashita, Noriaki Yahata, Takashi Itahashi, Giuseppe Lisi, Takashi Yamada, Naho Ichikawa, Masahiro Takamura, Yujiro Yoshihara, Akira Kunimatsu, Naohiro Okada, Hirotaka Yamagata, Koji Matsuo, Ryuichiro Hashimoto, Go Okada, Yuki Sakai, Jun Morimoto, Jin Narumoto, Yasuhiro Shimada, Kiyoto Kasai, Nobumasa Kato, Hidehiko Takahashi, Yasumasa Okamoto, Saori C Tanaka, Okito Yamashita, Mitsuo Kawato, Hiroshi Imamizu

References:
Harmonization of resting-state functional MRI data across multiple imaging sites via the separation of site differences into sampling bias and measurement bias“, bioRxiv, 2018, doi: https://doi.org/10.1101/440875

Funding:
This study was conducted under the “Development of BMI Technologies for Clinical Application” of the Strategic Research Program for Brain Sciences, and the contract research Grant Number JP18dm0307008 supported by the Japan Agency for Medical Research and Development (AMED). This study was also partially supported by the ImPACT Program of the Council for Science, Technology and Innovation (Cabinet Office, Government of Japan). H.I. was partially supported by JSPS KAKENHI 26120002.